Febrile Disease Landscape in Cambodia Via Metagenomic Pathogen Sequencing

Last updated: June 4, 2025
Sponsor: National Institute of Allergy and Infectious Diseases (NIAID)
Overall Status: Active - Recruiting

Phase

N/A

Condition

N/A

Treatment

N/A

Clinical Study ID

NCT04034264
999919109
19-I-N109
  • Ages 2-65
  • All Genders
  • Accepts Healthy Volunteers

Study Summary

Background:

Vector-borne diseases are caused by the bite of an infected mosquito, fly, flea, tick, or other blood-feeder. These diseases cause almost 1 million deaths per year. And they are on the rise, particularly in Southeast Asia in particular. Researchers think that these diseases make up about 10 percent of fevers in Cambodia. But many of these illnesses are never diagnosed. Studying these diseases can help find new ways to identify and treat them.

Objective:

To find pathogens in people who have a fever using metagenomic pathogen sequencing platforms.

Eligibility:

People aged 2 months to 65 years with a fever of at least 38 degrees Celsius or those diagnosed with infection by a pathogen of concern who visit the referral hospital in Cambodia. Close contacts of people diagnosed with infection by a pathogen of concern may also be enrolled.

Design:

Participants will be screened with their medical history. Children will be weighed to make sure they are big enough to give blood samples.

Participants will share data about their sex, age, and where they live. They will answer more questions about their heath history. They will answer questions about and any places to which they have recently traveled. They will take a questionnaire. They will have a blood test. If they have respiratory symptoms, they will have a nasal swab.

Participants may be contacted within 1-2 weeks (early) and/or within 3 months (late) from their enrollment date to provide an optional follow-up blood samples and nasal swabs.

Eligibility Criteria

Inclusion

  • INCLUSION CRITERIA:

In order to be eligible to participate in this study, an individual must meet all of the following criteria:

  • Provision of signed and dated informed consent form.

  • Stated willingness to comply with all study procedures.

  • Male or female, aged 2 months to 65 years.

  • Meets one of the following case definitions:

  • Febrile patient: has documented fever equal to or greater than 38 degreescelsius in previous 24 hours.

  • Red flag patient: is an individual with disease relating to a red flag pathogen (see list, below), with confirmed standard laboratory testing (e.g., bloodculture, polymerase chain reaction [PCR]) for the pathogen in question.

  • Afebrile close contact: is an afebrile individual who lived in the samehousehold or worked in the same enclosed workspace on a daily basis with a redflag patient at the time they got sick with a known pathogen.

  • Willing to allow biological samples to be stored for future research and for allde-identified metagenomic sequencing data to be stored in publicly accessibledatabases.

Exclusion

EXCLUSION CRITERIA:

  • Any underlying, chronic, or current medical condition that, in the opinion of theinvestigator, would interfere with participation in the study (e.g., inability orgreat difficulty in drawing blood).

  • Any febrile individual who has had surgery in the prior month.

  • Any patient who enrolled and exited this study within 30 days of the initial studyblood draw, or afebrile close contact who enrolled and exited within 14 days.

Study Design

Total Participants: 6500
Study Start date:
July 23, 2019
Estimated Completion Date:
July 01, 2026

Study Description

Vector-borne diseases continue to cause significant global morbidity and mortality, particularly in Southeast Asia. However, given a lack of diagnostics available in resource-poor countries, many vector-borne diseases are never diagnosed and therefore their impact is underappreciated. Cross-sectional retrospective surveys have revealed higher than expected antibody prevalence to a number of diseases including mosquito-borne viruses and ectoparasite-borne rickettsial diseases.

Here, we aim to collect specimens from individuals with acute febrile illness or red flag pathogens to better describe the febrile disease landscape of Cambodia using novel genomics technologies (unbiased next-generation sequencing) to investigate possible infectious etiologies of illnesses of unexplained etiology in Cambodian children and adults. If a highly transmissible and/or highly virulent (red flag) pathogen of public health concern is identified, we will take a convalescent sample from the individual and screen his/her close contacts with serological and molecular assays to add an additional layer of understanding of the disease burden. With the current rise of vector-borne diseases around the world, we hope the results of this study contribute to better understanding the epidemiology and burden for

vector-borne diseases in this region.

Connect with a study center

  • Kampong Speu Referral Hospital

    Chbar Mon,
    Cambodia

    Active - Recruiting

  • Kampong Thom Provincial Referral Hospital

    Phnom Penh,
    Cambodia

    Active - Recruiting

  • Kantha Bopha Hospital

    Phnom Penh,
    Cambodia

    Active - Recruiting

  • Khmer-Soviet Friendship Hospital

    Phnom Penh,
    Cambodia

    Active - Recruiting

  • National Maternal and Child Health Center

    Phnom Penh,
    Cambodia

    Active - Recruiting

  • National Pediatric Hospital

    Phnom Penh,
    Cambodia

    Active - Recruiting

  • Preah Kossomak Hospital

    Phnom Penh,
    Cambodia

    Active - Recruiting

  • Takeo District Referral Hospital

    Takeo,
    Cambodia

    Active - Recruiting

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