Vaginal Microbiome Exposure and Immune Responses in C-section Infants

Last updated: May 30, 2025
Sponsor: National Institute of Allergy and Infectious Diseases (NIAID)
Overall Status: Active - Not Recruiting

Phase

1

Condition

Asthma

Allergies & Asthma

Treatment

C-section -Vaginal seeding

standard care

C-section - Placebo Seeding

Clinical Study ID

NCT03567707
DAIT ITN079AD
ACTIVATE
  • Ages 18-45
  • Female

Study Summary

The purpose of this research study is to assess at how differences in the microbiome (naturally occurring bacteria) of a baby may protect, or put a baby at risk, for allergic problems. The microbiome refers to the thousands of bacteria and molds that live in and on our bodies. The microbiome plays an important role in our health. Differences in the microbiome can affect our immune system in ways that might make some people more likely to get allergies and asthma.

Early life events and exposures are very important for establishing the human microbiome. The newborn baby's microbiome changes very quickly during the first weeks and months of life. There is information that suggests C-section birth is associated with higher risk of certain diseases, including allergies and asthma. Some researchers think one reason for this is that passing through the mother's vaginal canal during birth exposes the baby to bacteria that promote healthy immune system development, something that C-section babies don't get. Transferring these potentially beneficial vaginal bacteria to C-section babies may help prevent some diseases later.

Eligibility Criteria

Inclusion

Inclusion Criteria:

  • Pregnant woman must be able to understand and provide informed consent;

  • Pregnant women with singleton pregnancies with a non-anomalous, appropriately-grownfetus; and

  • Atopic disease (asthma, allergic rhinoconjunctivitis, or atopic dermatitis) or foodallergy in a first-degree relative of the infant to-be-delivered (for exception, seeexclusion criteria*).

Exclusion

Exclusion Criteria:

For C-Section Mothers:

  • In labor with evidence of cervical change prior to the scheduled C-section;

  • Rupture of the amniotic sac; or

  • Vaginal pH > 4.5 on the day of delivery.

For Vaginal Delivery Mothers:

  • Use of induction agents for cervical ripening (cervical prostaglandin or Foleycatheter).

For All Mothers and Their Infants:

  • Inability or unwillingness of a participant to give written informed consent orcomply with study protocol;

  • History of moderate to severe atopic dermatitis within the past year in the mother;

  • Express no intention to breastfeed;

  • History of diabetes mellitus or gestational diabetes mellitus;

  • History of inflammatory bowel disease (IBD) (e.g., Crohn's Disease or ulcerativecolitis);

  • Evidence of an active sexually transmitted infection (STI) (e.g., primary herpes orgenital warts, or trichomonas), yeast infection, or vaginosis on the day ofdelivery;

  • Evidence of prior or current hepatitis B or C infection as demonstrated by thepresence of the hepatitis B surface antigen, antibody positivity against thehepatitis B core antigen, or antibody positivity against the hepatitis C virus;

--Assessment for active hepatitis B and hepatitis C infection will be repeated forthis study even if prior testing during the current pregnancy was negative;

  • Evidence of Human Immunodeficiency Virus (HIV) infection (e.g., positive HIVserology or detectable viral load);

  • Positive Group B Streptococcus (GBS) test results by rectovaginal swab performedwithin 5 weeks of delivery, a prior infant with invasive GBS disease, or GBSbacteriuria at any point during pregnancy;

  • Evidence of N. gonorrhoeae or C. trachomatis infection by testing performed within 5weeks of delivery;

  • History of antibiotic administration during the third trimester of the currentpregnancy;

  • Mothers with serious chronic conditions during pregnancy;

  • Mothers with complicated pregnancies including pre-eclampsia, chorioamnionitis,placenta previa, vasa previa, placental abruption, or active vaginal bleeding;

  • Maternal fever on the day of delivery (visit 0);

  • Infants with complications during delivery, such that the infant requires more thanthe standard neonatal resuscitation after delivery;

  • Infants delivered prior to 37 weeks of gestation;

  • Thick particulate meconium noted upon delivery of the infant;

  • Presence of a congenital abnormality in the infant for which study participation isnot recommended;

  • Current, diagnosed mental illness or current, diagnosed or self-reported drug oralcohol abuse in the mother that, in the opinion of the investigator, wouldinterfere with the participant's ability to comply with study requirements;

  • Use of investigational drugs during the third trimester of pregnancy; or

  • Past or current medical problems or findings from physical examination or laboratorytesting that are not listed above, which, in the opinion of the investigator may:

  • Pose additional risks from participation in the study,

  • Interfere with the participant's ability to comply with study requirements, or

  • May impact the quality or interpretation of the data obtained from the study.

Study Design

Total Participants: 114
Treatment Group(s): 3
Primary Treatment: C-section -Vaginal seeding
Phase: 1
Study Start date:
November 28, 2018
Estimated Completion Date:
January 31, 2027

Study Description

This is a pilot study of 120 pregnant women and their infants conducted at hospitals in the Mount Sinai Health System in New York, NY. Eighty women will deliver via elective, unlabored C-section, and 40 will undergo spontaneous vaginal delivery. The 80 women undergoing C-section will be randomized in a masked (blinded) 1:1 fashion to have their neonates undergo vaginal seeding or placebo seeding immediately after birth (within 10 minutes) followed by standard care.The infants of the 40 women undergoing spontaneous vaginal delivery will receive usual standard care.

All 120 pregnant women will have biospecimens collected to assess their vaginal, skin, gut, placental, breast milk, and oral microbiome. All infants will have biospecimens collected to assess their gut, skin, nasal, and oral microbiome, as well as blood to assess allergen sensitization and immune markers. Infants will be followed with at-home stool collections and questionnaires weekly for the first 4 weeks and at weeks 8, 26, and 39. An in-person study visit will occur at 13 weeks and 52 weeks, and the primary endpoint will be assessed at 52 weeks. Study enrollment is projected to occur over 24 months.

Connect with a study center

  • Icahn School of Medicine at Mount Sinai

    New York, New York 10029
    United States

    Site Not Available

  • Mount Sinai West

    New York, New York 10019
    United States

    Site Not Available

Not the study for you?

Let us help you find the best match. Sign up as a volunteer and receive email notifications when clinical trials are posted in the medical category of interest to you.